{
  "_id": "6a1f1030b401979e7341d714",
  "Package": "scISR",
  "Type": "Package",
  "Title": "Single-Cell Imputation using Subspace Regression",
  "Version": "0.1.1",
  "Authors@R": "c(\nperson(\"Duc\", \"Tran\", , \"duct@nevada.unr.edu\", role = c(\"aut\", \"cre\")),\nperson(\"Bang\", \"Tran\", role = c(\"aut\")),\nperson(\"Hung\", \"Nguyen\", role = c(\"aut\")),\nperson(\"Tin\", \"Nguyen\", role = c(\"fnd\"))\n)",
  "Maintainer": "Duc Tran <duct@nevada.unr.edu>",
  "Description": "Provides an imputation pipeline for single-cell RNA\nsequencing data. The 'scISR' method uses a hypothesis-testing\ntechnique to identify zero-valued entries that are most likely\naffected by dropout events and estimates the dropout values\nusing a subspace regression model (Tran et.al. (2022)\n<DOI:10.1038/s41598-022-06500-4>).",
  "License": "LGPL",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "RoxygenNote": "7.1.1",
  "NeedsCompilation": "no",
  "VignetteBuilder": "knitr",
  "URL": "https://github.com/duct317/scISR",
  "BugReports": "https://github.com/duct317/scISR/issues",
  "Config/pak/sysreqs": "make",
  "Repository": "https://duct317.r-universe.dev",
  "Date/Publication": "2022-06-30 18:47:05 UTC",
  "RemoteUrl": "https://github.com/duct317/scisr",
  "RemoteRef": "HEAD",
  "RemoteSha": "b25eac4ad6b5ee2eaca923d688ffaa49032ac3b1",
  "Packaged": {
    "Date": "2026-05-17 08:23:25 UTC",
    "User": "root"
  },
  "Author": "Duc Tran [aut, cre],\nBang Tran [aut],\nHung Nguyen [aut],\nTin Nguyen [fnd]",
  "MD5sum": "17daa30c082309e908c777e1f61a45ce",
  "_user": "duct317",
  "_type": "src",
  "_file": "scISR_0.1.1.tar.gz",
  "_fileid": "86ad6f4db1af2862935a2b4abfc01482c636394752df07f72c50480d473b7ae7",
  "_filesize": 685735,
  "_sha256": "86ad6f4db1af2862935a2b4abfc01482c636394752df07f72c50480d473b7ae7",
  "_created": "2026-05-17T08:23:25.000Z",
  "_published": "2026-06-02T17:17:36.406Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79129857715,
      "time": 148,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7040799060"
    },
    {
      "job": 79129857749,
      "time": 158,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7040800035"
    },
    {
      "job": 79129858033,
      "time": 164,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7040798725"
    },
    {
      "job": 79129857810,
      "time": 165,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7040797653"
    },
    {
      "job": 79129857238,
      "time": 196,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7040782282"
    },
    {
      "job": 79129856807,
      "time": 130,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7364862236"
    },
    {
      "job": 79129857639,
      "time": 98,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7040793565"
    },
    {
      "job": 79129857748,
      "time": 75,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7040790944"
    },
    {
      "job": 79129857881,
      "time": 85,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7040792148"
    }
  ],
  "_buildurl": "https://github.com/r-universe/duct317/actions/runs/25985701173",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/duct317/scisr",
  "_commit": {
    "id": "b25eac4ad6b5ee2eaca923d688ffaa49032ac3b1",
    "author": "Duc <duct@nevada.unr.edu>",
    "committer": "Duc <duct@nevada.unr.edu>",
    "message": "add CRAN link\n",
    "time": 1656614825
  },
  "_maintainer": {
    "name": "Duc Tran",
    "email": "duct@nevada.unr.edu"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.4",
      "role": "Depends"
    },
    {
      "package": "cluster",
      "role": "Imports"
    },
    {
      "package": "entropy",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "parallel",
      "role": "Imports"
    },
    {
      "package": "irlba",
      "role": "Imports"
    },
    {
      "package": "PINSPlus",
      "role": "Imports"
    },
    {
      "package": "matrixStats",
      "role": "Imports"
    },
    {
      "package": "markdown",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "mclust",
      "role": "Suggests"
    }
  ],
  "_owner": "duct317",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 3,
  "_contributors": [
    {
      "user": "duct317",
      "count": 1,
      "uuid": 11046415
    }
  ],
  "_userbio": {
    "uuid": 11046415,
    "type": "user",
    "name": "Duc Tran"
  },
  "_downloads": {
    "count": 173,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/scISR"
  },
  "_devurl": "https://github.com/duct317/scisr",
  "_searchresults": 8,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/readme.html",
    "extra/readme.md",
    "extra/scISR.html",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/duct317/scisr",
  "_realowner": "duct317",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.1",
      "date": "2022-06-30"
    }
  ],
  "_exports": [
    "scISR"
  ],
  "_datasets": [
    {
      "name": "Goolam",
      "title": "Goolam",
      "object": "Goolam",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "Goolam",
      "title": "Goolam",
      "topics": [
        "Goolam"
      ]
    },
    {
      "page": "scISR",
      "title": "scISR: Single-cell Imputation using Subspace Regression",
      "topics": [
        "scISR"
      ]
    }
  ],
  "_readme": "https://github.com/duct317/scisr/raw/HEAD/README.md",
  "_rundeps": [
    "cluster",
    "codetools",
    "commonmark",
    "doParallel",
    "entropy",
    "FNN",
    "foreach",
    "impute",
    "irlba",
    "iterators",
    "lattice",
    "litedown",
    "markdown",
    "Matrix",
    "matrixStats",
    "mclust",
    "PINSPlus",
    "Rcpp",
    "RcppArmadillo",
    "RcppParallel",
    "xfun"
  ],
  "_vignettes": [
    {
      "source": "Example.Rmd",
      "filename": "Example.html",
      "title": "scISR package manual",
      "author": "Duc Tran",
      "engine": "knitr::knitr",
      "headings": [
        "Introduction",
        "Installation",
        "Using scISR",
        "Preparing data",
        "Imputation",
        "Result evaluation"
      ],
      "created": "2021-01-21 06:05:50",
      "modified": "2022-05-09 19:44:31",
      "commits": 3
    }
  ],
  "_score": 4.176091259055681,
  "_indexed": true,
  "_nocasepkg": "scisr",
  "_universes": [
    "duct317"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.1",
      "date": "2026-05-17T08:25:40.000Z",
      "distro": "noble",
      "commit": "b25eac4ad6b5ee2eaca923d688ffaa49032ac3b1",
      "fileid": "967f2fd93a1316e6ebb3439d7084de14a6f8ff4809053ca69eb217e2367a0e5b",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/duct317/actions/runs/25985701173"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.1.1",
      "date": "2026-05-17T08:25:51.000Z",
      "distro": "noble",
      "commit": "b25eac4ad6b5ee2eaca923d688ffaa49032ac3b1",
      "fileid": "4cd773f05b12e786a5a472108c1799518aab8b097324f1d75e0d27c4ae8f95bd",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/duct317/actions/runs/25985701173"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.1",
      "date": "2026-05-17T08:25:46.000Z",
      "commit": "b25eac4ad6b5ee2eaca923d688ffaa49032ac3b1",
      "fileid": "f6aa8b5245de06b8065f4c8c04efe827b6846d93f9ea9cc2c86a1453bfcc8d1b",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/duct317/actions/runs/25985701173"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.1.1",
      "date": "2026-05-17T08:25:36.000Z",
      "commit": "b25eac4ad6b5ee2eaca923d688ffaa49032ac3b1",
      "fileid": "a760f0ff85e1429e05da5f7975e1c42a03f9f77ef1d27fdc3a283861c29cd745",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/duct317/actions/runs/25985701173"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.1",
      "date": "2026-05-17T08:24:47.000Z",
      "commit": "b25eac4ad6b5ee2eaca923d688ffaa49032ac3b1",
      "fileid": "bb3b007768f3066a728c0288cad4f81f6c59a0a2a23b365edcc56e3a4d44734f",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/duct317/actions/runs/25985701173"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.1",
      "date": "2026-05-17T08:24:26.000Z",
      "commit": "b25eac4ad6b5ee2eaca923d688ffaa49032ac3b1",
      "fileid": "78d8ae7cbd94b016893b564751a7a6fa69a8fc812b18144ce820839d90fca53d",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/duct317/actions/runs/25985701173"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.1.1",
      "date": "2026-05-17T08:24:36.000Z",
      "commit": "b25eac4ad6b5ee2eaca923d688ffaa49032ac3b1",
      "fileid": "b5ba4481c06b11d1923925f68768c32dbf7d28e54ca8378fcd7462b78496a331",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/duct317/actions/runs/25985701173"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.1",
      "date": "2026-06-02T17:17:13.000Z",
      "commit": "b25eac4ad6b5ee2eaca923d688ffaa49032ac3b1",
      "fileid": "6a940012b57ffa03ca6f491fba1cef948854b45b001257f9fe710e9b74869a29",
      "status": "success",
      "buildurl": "https://github.com/r-universe/duct317/actions/runs/25985701173"
    }
  ]
}